rs968488 chr22:17172140 C>T
- Sequence
cagctctgtgtcccaggacgagca[C/T]atacctactgtcacccactgtgcg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) foreskin keratinocyte K562 (myelogenous leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.20 | 0.83 | 2.05 | |||
| GM12878 (female B-cells) | 0.61 | 0.29 | 1.22 | |||
| foreskin keratinocyte | n/a | 0.57 | 2.50 | |||
| K562 (myelogenous leukemia) | 1.49 | n/a | 1.33 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Thyroid