ADASTRA v1.6.10
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rs968567
chr11:61828092
C
>
T
Sequence
gaggaggtgtcgaggccctgagct[C/T]ccggggagtttttactggaggcaa
ASB in cell types
HEK293 (embryonic kidney)
HEK293T (embryonic kidney)
cranial neural crest cells
liver
ASB for transcription factors
LMBL2_HUMAN
AP2A_HUMAN
SP2_HUMAN
ZFX_HUMAN
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Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
LMBL2_HUMAN
n/a
2.71
1.00
1.4·10
-3
2.00
n/a
n/a
AP2A_HUMAN
2.14
-2.81
0.02
1.00
2.00
n/a
No Hit
SP2_HUMAN
-0.91
0.83
1.00
0.02
1.33
n/a
No Hit
ZFX_HUMAN
-1.43
1.27
1.00
0.02
1.44
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
EMBL-EBI
blood metabolite levels
,
fatty acid desaturase activity (serum)
,
glycerophospholipid levels
,
rheumatoid arthritis
,
serum metabolite ratios in chronic kidney disease
,
vitiligo
GRASP
alkaline phosphatase (alp) in plasma
,
asthma
,
attention-deficit/hyperactivity disorder (adhd)
,
bipolar disorder
,
comorbid depressive syndrome and alcohol dependence
,
fads1 gene expression in peripheral blood leucocytes
,
fads2 gene expression in liver
,
fads2 gene expression in peripheral blood leucocytes
,
fasting insulin
,
hdl cholesterol
,
homa-b
,
irritible bowel syndrome
,
ldl cholesterol
,
ldl cholesterol change with statins
,
maternal transmission distortion
,
plasma alpha-linolenic acid levels
,
plasma docosapentaenoic acid levels
,
plasma eicosapentaenoic acid levels
,
plasma oleic acid
,
rheumatoid arthritis
,
total cholesterol
,
total cholesterol change with statins
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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