rs9713 chr2:161308497 A>T
- Sequence
ctgattcatcgccggtttgcagac[A/T]gagccgcgtcgggtgtgcgccgct
- ASB in cell types
- CD14+ monocytes VCaP (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 0.64 | 2.34 | 2.00 | n/a | No Hit | |||
| GABPA_HUMAN | 0.20 | 0.74 | 1.51 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, college completion, triglycerides change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood