rs9806220 chr15:65832994 T>G
- Sequence
acccagctgctccttcaagtggtt[T/G]ccaagctccttggccctgtgcatg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) breast tumor tissue
- ASB for transcription factors
- RFX1_HUMAN FOXA1_HUMAN CREB1_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 0.74 | 3.19 | 1.71 | 2.34 | Concordant | |||
| FOXA1_HUMAN | 0.47 | 0.78 | 1.67 | n/a | No Hit | |||
| CREB1_HUMAN | -1.82 | 1.70 | 1.50 | n/a | No Hit | |||
| SPI1_HUMAN | -0.07 | 1.56 | 1.97 | n/a | No Hit | |||
| SIN3A_HUMAN | -0.43 | 1.23 | 1.67 | n/a | n/a |
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Motif analysis
