rs981947 chr2:71130580 G>C
- Sequence
ggaactttcggctctgaaatccaa[G/C]ttgcgctgggcgcatctttgccgc
- ASB in cell types
- GM12878 (female B-cells) VCaP (prostate carcinoma) K562 (myelogenous leukemia) monocyte-derived macrophages
- ASB for transcription factors
- FOXK2_HUMAN GABPA_HUMAN E4F1_HUMAN IRF5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.82 | n/a | 1.33 | n/a | n/a | |||
| GABPA_HUMAN | 1.30 | -0.55 | 1.69 | 2.97 | Discordant | |||
| E4F1_HUMAN | 1.89 | -1.20 | 1.33 | n/a | n/a | |||
| IRF5_HUMAN | 1.70 | n/a | 1.33 | n/a | n/a | |||
| TF65_HUMAN | 1.43 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood