rs984125 chr17:31220236 A>G
- Sequence
tgtctttttgattgtagccatcct[A/G]atgtacatactgtacaaatgttta
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.02 | 0.15 | 1.60 | -2.76 | Concordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease, body mass index (bmi), height, ldl cholesterol, obesity with early age of onset (age >2), sporadic creutzfeldt-jakob disease, total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Liver, Lung, Nerve_Tibial, Spleen, Stomach, Testis, Thyroid, Whole_Blood