rs9854196 chr3:196528991 C>G
- Sequence
caggcggctcccggccacgcccgt[C/G]gctgagcgtgaggcgatggcggcc
- ASB in cell types
- SK-N-SH (neuroblastoma) MCF7 (Invasive ductal breast carcinoma) bipolar neuron pancreas
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.44 | 0.40 | 1.44 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood