rs9874396 chr3:27582110 A>G
- Sequence
tttgtcaataaccatggtgttcct[A/G]gcagtatttgggtttttttttttt
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| LNCaP (prostate carcinoma) | -0.77 | 1.04 | 1.46 | |||
| VCaP (prostate carcinoma) | 0.75 | 0.48 | 1.64 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg