rs9880263 chr3:8623135 A>G
- Sequence
acagcggccaaaaccacagaggcc[A/G]ggagaagacagggctgggggttgg
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) ascending aorta GM12878 (female B-cells)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN CTCF_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.40 | -0.06 | 1.80 | n/a | n/a | |||
| RAD21_HUMAN | 1.30 | 0.15 | 1.84 | n/a | n/a | |||
| CTCF_HUMAN | 0.62 | 0.90 | 1.39 | -0.93 | Weak Discordant | |||
| KDM5B_HUMAN | -0.02 | 1.62 | 1.83 | n/a | n/a |
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Motif analysis
