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rs9881832 chr3:12787537 C>T

Sequence
aagtcctcgccatcttccagcagg[C/T]ggcggtaggtggcaatctcagcct
ASB in cell types
LNCaP (prostate carcinoma) spleen pancreas HEK293 (embryonic kidney)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.57 2.54 1.005.9·10-90 1.44 3.85 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum Artery_Tibial Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Muscle_Skeletal Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Testis Thyroid

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