rs9890416 chr17:50944250 T>C
- Sequence
cctgtgtcggccccagaagcagga[T/C]cagtgttagctgcagcctggccct
- ASB in cell types
- K562 (myelogenous leukemia) T47D (invasive ductal carcinoma) cranial neural crest cells
- ASB for transcription factors
- ESR1_HUMAN AP2A_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.07 | -0.07 | 1.81 | n/a | No Hit | |||
| AP2A_HUMAN | 1.92 | -1.77 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.24 | -3.20 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood