rs9900294 chr17:81309707 C>T
- Sequence
ggaggagctggtggacagcacgcc[C/T]cacttcttccccagcccctccagg
- ASB in cell types
- cranial neural crest cells HeLa S3 (cervical adenocarcinoma) SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- AP2A_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.05 | 0.53 | 1.75 | n/a | No Hit | |||
| RAD21_HUMAN | -1.12 | 1.30 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood