rs9923732 chr16:81077298 A>G
- Sequence
gcccaacaaagcctagcactggcg[A/G]ggcggttcgtggcatctcctatcc
- ASB in cell types
- HCT-116 (colon carcinoma) cranial neural crest cells CD14+ monocytes thymus-derived CD34- cells
- ASB for transcription factors
- AP2A_HUMAN STAT1_HUMAN BC11B_HUMAN MAX_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.39 | -3.65 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.58 | n/a | 2.50 | n/a | No Hit | |||
| BC11B_HUMAN | 2.04 | n/a | 2.00 | n/a | n/a | |||
| MAX_HUMAN | 1.42 | -1.47 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood