rs9928796 chr16:68786815 A>G
- Sequence
cttgttgtacagtcatctgcaagc[A/G]catgtgacctggagactgtgggaa
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- USF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF2_HUMAN | 1.62 | -1.44 | 1.00 | 0.76 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Testis, Whole_Blood