rs9970334 chr1:6236178 T>G
- Sequence
ctgtgccgggcgggggccgggaag[T/G]ggtgggagaagtcgccgcccgcgt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 1.62 | -0.20 | 1.44 | 5.31 | Discordant | |||
| SPT5H_HUMAN | 1.40 | -1.68 | 1.33 | n/a | n/a |
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Motif analysis
