rs9972429 chr15:49471935 A>C
- Sequence
acttggaatccctcgtgacagtga[A/C]gttctggataagaaagtgaaagac
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- BHE40_HUMAN ATF7_HUMAN RAD51_HUMAN PKNX1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | n/a | 2.93 | 1.33 | n/a | No Hit | |||
| ATF7_HUMAN | n/a | 2.19 | 1.33 | n/a | n/a | |||
| RAD51_HUMAN | -3.37 | 2.98 | 1.33 | n/a | n/a | |||
| PKNX1_HUMAN | -2.20 | 2.00 | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | -3.00 | 2.68 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pituitary, Thyroid, Whole_Blood