rs9990079 chr3:113838843 G>A
- Sequence
gcctgtaactcgcagcgcgcgctg[G/A]aggtgggcgcggggcggtgcggtg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SMC3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -0.44 | 1.12 | 2.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.44 | 0.60 | 1.43 | -2.83 | Concordant |
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Motif analysis
