rs2074143 chr17:43779254 A>G

Sequence
ggcccaataaacatttcgtggcgg[A/G]ggtacacctaggggtcgcttcagt
ASB in cell types
GM19240 (B cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) neural cell GM02630 (Fanconi anemi)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.92 -0.10 4.9·10-411.00 1.39 0.10 Weak Discordant
RAD21_HUMAN 1.88 -1.50 8.1·10-31.00 2.00 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP bipolar disorder,  birth weight,  hdl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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