rs6435862 chr2:214807822 G>T
- Sequence
ctgaccacagtctaagtgaagccc[G/T]atgcttccacataggtatgtgcca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | n/a | 2.51 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, high-risk neuroblastoma, irritible bowel syndrome, ldl cholesterol, low-intermediate risk neuroblastoma, neuroblastoma, neuroblastoma (brain cancer), total cholesterol, triglycerides
PheWAS acute pericarditis, acute pharyngitis, acute posthemorrhagic anemia, acute prostatitis, anemia nos, anomalies of pupillary function, bacterial enteritis, cancer, suspected or other, cellulitis and abscess of arm, cholelithiasis, cholelithiasis and cholecystitis, chorioretinal scars, chronic lymphocytic thyroiditis, chronic prostatitis, complications of transplants and reattached limbs, corneal edema, cysts of the jaws, diseases of lips, diseases of respiratory system, disorders of choroid, diverticulum of esophagus, acquired, dyshidrosis, effects of radiation nos, first degree av block, fracture of hand or wrist, fracture of tibia and fibula, hydrocele, hyperplasia of prostate, inflammatory diseases of prostate, intestinal infection, lung disease due to external agents, macular degeneration, dry, macular puckering of retina, menieres disease, myasthenia gravis, myoneural disorders, non-melanoma skin cancer, noninflammatory disorders of cervix, nonsenile cataract, open wound of ear, other anemias, other cells and casts in urine, other disorders of ear, other disorders of prostate, other disorders of tympanic membrane, other endocrine disorders, other headache syndromes, other unspecified back disorders, otitis media, perforation of tympanic membrane, peripheral or central vertigo, peritoneal or intestinal adhesions, photodermatitis & sunburn, pneumococcal pneumonia, pneumoconiosis, premature menopause and other ovarian failure, prostatitis, pruritus and related conditions, redundant prepuce and phimosis/bxo, respiratory failure, insufficiency, arrest, retention of urine, schizophrenia and other psychotic disorders, sexual and gender identity disorders, sicca syndrome, skin cancer, suppurative and unspecified otitis media, symptoms involving respiratory system, temporomandibular joint disorder nos, testicular dysfunction, testicular hypofunction, vitamin b-complex deficiencies, vitamin deficiency
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood